node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Amet_2144 | Amet_2302 | Amet_2144 | Amet_2302 | PFAM: sigma-70 region 4 domain protein; RNA polymerase, alpha subunit domain protein; KEGG: ppe:PEPE_0533 hypothetical protein. | TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: cth:Cthe_0158 ribonuclease, Rne/Rng family. | 0.501 |
Amet_2144 | Amet_2529 | Amet_2144 | Amet_2529 | PFAM: sigma-70 region 4 domain protein; RNA polymerase, alpha subunit domain protein; KEGG: ppe:PEPE_0533 hypothetical protein. | Polynucleotide adenylyltransferase region; PFAM: CBS domain containing protein; phosphoesterase, RecJ domain protein; Polynucleotide adenylyltransferase region; KEGG: cth:Cthe_0684 polynucleotide adenylyltransferase region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.646 |
Amet_2144 | Amet_2952 | Amet_2144 | Amet_2952 | PFAM: sigma-70 region 4 domain protein; RNA polymerase, alpha subunit domain protein; KEGG: ppe:PEPE_0533 hypothetical protein. | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: dsy:DSY3754 hypothetical protein. | 0.630 |
Amet_2144 | Amet_3073 | Amet_2144 | Amet_3073 | PFAM: sigma-70 region 4 domain protein; RNA polymerase, alpha subunit domain protein; KEGG: ppe:PEPE_0533 hypothetical protein. | PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: cno:NT01CX_0997 ATP-dependent RNA helicase. | 0.630 |
Amet_2144 | infB | Amet_2144 | Amet_2673 | PFAM: sigma-70 region 4 domain protein; RNA polymerase, alpha subunit domain protein; KEGG: ppe:PEPE_0533 hypothetical protein. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.869 |
Amet_2144 | nusA | Amet_2144 | Amet_2676 | PFAM: sigma-70 region 4 domain protein; RNA polymerase, alpha subunit domain protein; KEGG: ppe:PEPE_0533 hypothetical protein. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.994 |
Amet_2144 | pnp1 | Amet_2144 | Amet_1001 | PFAM: sigma-70 region 4 domain protein; RNA polymerase, alpha subunit domain protein; KEGG: ppe:PEPE_0533 hypothetical protein. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.726 |
Amet_2144 | rny | Amet_2144 | Amet_2657 | PFAM: sigma-70 region 4 domain protein; RNA polymerase, alpha subunit domain protein; KEGG: ppe:PEPE_0533 hypothetical protein. | Metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. | 0.416 |
Amet_2144 | rplD | Amet_2144 | Amet_4477 | PFAM: sigma-70 region 4 domain protein; RNA polymerase, alpha subunit domain protein; KEGG: ppe:PEPE_0533 hypothetical protein. | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.944 |
Amet_2144 | rpoB | Amet_2144 | Amet_4486 | PFAM: sigma-70 region 4 domain protein; RNA polymerase, alpha subunit domain protein; KEGG: ppe:PEPE_0533 hypothetical protein. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
Amet_2302 | Amet_2144 | Amet_2302 | Amet_2144 | TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: cth:Cthe_0158 ribonuclease, Rne/Rng family. | PFAM: sigma-70 region 4 domain protein; RNA polymerase, alpha subunit domain protein; KEGG: ppe:PEPE_0533 hypothetical protein. | 0.501 |
Amet_2302 | Amet_2529 | Amet_2302 | Amet_2529 | TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: cth:Cthe_0158 ribonuclease, Rne/Rng family. | Polynucleotide adenylyltransferase region; PFAM: CBS domain containing protein; phosphoesterase, RecJ domain protein; Polynucleotide adenylyltransferase region; KEGG: cth:Cthe_0684 polynucleotide adenylyltransferase region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.456 |
Amet_2302 | Amet_2952 | Amet_2302 | Amet_2952 | TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: cth:Cthe_0158 ribonuclease, Rne/Rng family. | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: dsy:DSY3754 hypothetical protein. | 0.510 |
Amet_2302 | Amet_3073 | Amet_2302 | Amet_3073 | TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: cth:Cthe_0158 ribonuclease, Rne/Rng family. | PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: cno:NT01CX_0997 ATP-dependent RNA helicase. | 0.510 |
Amet_2302 | pnp1 | Amet_2302 | Amet_1001 | TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: cth:Cthe_0158 ribonuclease, Rne/Rng family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.767 |
Amet_2529 | Amet_2144 | Amet_2529 | Amet_2144 | Polynucleotide adenylyltransferase region; PFAM: CBS domain containing protein; phosphoesterase, RecJ domain protein; Polynucleotide adenylyltransferase region; KEGG: cth:Cthe_0684 polynucleotide adenylyltransferase region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | PFAM: sigma-70 region 4 domain protein; RNA polymerase, alpha subunit domain protein; KEGG: ppe:PEPE_0533 hypothetical protein. | 0.646 |
Amet_2529 | Amet_2302 | Amet_2529 | Amet_2302 | Polynucleotide adenylyltransferase region; PFAM: CBS domain containing protein; phosphoesterase, RecJ domain protein; Polynucleotide adenylyltransferase region; KEGG: cth:Cthe_0684 polynucleotide adenylyltransferase region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: cth:Cthe_0158 ribonuclease, Rne/Rng family. | 0.456 |
Amet_2529 | infB | Amet_2529 | Amet_2673 | Polynucleotide adenylyltransferase region; PFAM: CBS domain containing protein; phosphoesterase, RecJ domain protein; Polynucleotide adenylyltransferase region; KEGG: cth:Cthe_0684 polynucleotide adenylyltransferase region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.631 |
Amet_2529 | nusA | Amet_2529 | Amet_2676 | Polynucleotide adenylyltransferase region; PFAM: CBS domain containing protein; phosphoesterase, RecJ domain protein; Polynucleotide adenylyltransferase region; KEGG: cth:Cthe_0684 polynucleotide adenylyltransferase region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.403 |
Amet_2529 | pnp1 | Amet_2529 | Amet_1001 | Polynucleotide adenylyltransferase region; PFAM: CBS domain containing protein; phosphoesterase, RecJ domain protein; Polynucleotide adenylyltransferase region; KEGG: cth:Cthe_0684 polynucleotide adenylyltransferase region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.783 |