STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_1625KEGG: cpr:CPR_1870 small, acid-soluble spore protein, alpha/beta family. (66 aa)    
Predicted Functional Partners:
Amet_1619
PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cpf:CPF_2166 single-strand binding domain protein.
  
     0.743
Amet_1626
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bce:BC4326 methyltransferase.
       0.711
Amet_4605
PFAM: Peptidoglycan-binding LysM; KEGG: cth:Cthe_2402 peptidoglycan-binding LysM.
  
     0.700
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
   
 0.665
Amet_2499
Hypothetical protein; KEGG: tte:TTE1290 stage III sporulation protein AH.
  
     0.591
Amet_4772
KEGG: cth:Cthe_2259 hypothetical protein.
  
     0.581
Amet_1592
PFAM: small acid-soluble spore protein, alpha/beta type; KEGG: sth:STH1430 small acid-soluble spore protein.
  
   
 0.556
Amet_2498
TIGRFAM: Sporulation stage III, protein AG; KEGG: tte:TTE1289 stage III sporulation protein AG.
  
     0.556
Amet_2344
KEGG: ctc:CTC02207 hypothetical protein.
  
    0.555
Amet_1398
PFAM: NMT1/THI5 like; KEGG: ctc:CTC00407 ABC transporter substrate-binding protein.
  
     0.549
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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