STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xseBExodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (75 aa)    
Predicted Functional Partners:
xseA
Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
 
 0.999
Amet_2505
PFAM: Polyprenyl synthetase; KEGG: cth:Cthe_0831 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
  
 0.937
Amet_2506
PFAM: acid phosphatase/vanadium-dependent haloperoxidase related; KEGG: cth:Cthe_0830 acid phosphatase/vanadium-dependent haloperoxidase related.
       0.799
nusB
NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
  
  
 0.783
Amet_2502
O-sialoglycoprotein endopeptidase; PFAM: peptidase M22, glycoprotease; KEGG: sth:STH1848 O-sialoglycoprotein endopeptidase.
       0.712
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
   
    0.595
Amet_2343
TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: tte:TTE1184 Preprotein translocase subunit YajC.
  
  
 0.540
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.538
Amet_2500
PFAM: protein of unknown function DUF322; KEGG: cth:Cthe_0837 protein of unknown function DUF322.
       0.537
Amet_2499
Hypothetical protein; KEGG: tte:TTE1290 stage III sporulation protein AH.
       0.489
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.