STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_2765TIGRFAM: Sporulation integral membrane protein YlbJ; PFAM: nucleoside recognition domain protein; KEGG: cth:Cthe_1274 nucleoside recognition. (413 aa)    
Predicted Functional Partners:
Amet_3034
PFAM: putative stage IV sporulation YqfD; KEGG: tte:TTE0969 stage IV sporulation protein.
 
   
 0.861
Amet_3035
PFAM: protein of unknown function DUF1429; KEGG: cth:Cthe_1073 protein of unknown function DUF1429.
 
   
 0.855
Amet_4592
TIGRFAM: Sporulation stage II, protein R; KEGG: cth:Cthe_1920 stage II sporulation protein R.
  
   
 0.803
Amet_2872
Peptidase U4, sporulation factor SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
   
 0.798
Amet_2854
Sporulation stage IV, protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.793
Amet_0169
PFAM: YabP family protein; KEGG: tte:TTE2450 hypothetical protein.
  
   
 0.783
Amet_2496
TIGRFAM: Sporulation stage III, protein AE; KEGG: bha:BH2793 mutants block sporulation after engulfment.
  
    0.780
Amet_2492
TIGRFAM: Sporulation stage III, protein AA; SMART: AAA ATPase; KEGG: cth:Cthe_0845 stage III sporulation protein spoIIIAA.
  
   
 0.774
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
     0.773
Amet_0173
Sporulation stage II, protein E; KEGG: cth:Cthe_2681 serine phosphatase; TIGRFAM: Sporulation stage II, protein E; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein.
  
     0.771
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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