Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CEL30457.1 | CEL30459.1 | SRM1_03816 | SRM1_03818 | Antibiotic biosynthesis monooxygenase. | Hypothetical protein. | 0.612 |
| CEL30457.1 | soxR | SRM1_03816 | SRM1_03817 | Antibiotic biosynthesis monooxygenase. | Redox-sensitive transcriptional activator SoxR. | 0.644 |
| CEL30459.1 | CEL30457.1 | SRM1_03818 | SRM1_03816 | Hypothetical protein. | Antibiotic biosynthesis monooxygenase. | 0.612 |
| CEL30459.1 | soxR | SRM1_03818 | SRM1_03817 | Hypothetical protein. | Redox-sensitive transcriptional activator SoxR. | 0.524 |
| cbpA | hmrR_2 | SRM1_00641 | SRM1_00764 | Curved DNA-binding protein. | HTH-type transcriptional regulator HmrR. | 0.593 |
| cbpA | rpoS | SRM1_00641 | SRM1_01160 | Curved DNA-binding protein. | RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | 0.433 |
| cbpA | sodB_1 | SRM1_00641 | SRM1_00898 | Curved DNA-binding protein. | Superoxide dismutase [Mn/Fe]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.749 |
| cbpA | soxR | SRM1_00641 | SRM1_03817 | Curved DNA-binding protein. | Redox-sensitive transcriptional activator SoxR. | 0.593 |
| dnaJ | hmrR_2 | SRM1_00810 | SRM1_00764 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | HTH-type transcriptional regulator HmrR. | 0.593 |
| dnaJ | rpoB | SRM1_00810 | SRM1_05186 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.508 |
| dnaJ | rpoS | SRM1_00810 | SRM1_01160 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | 0.550 |
| dnaJ | sodB_1 | SRM1_00810 | SRM1_00898 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | Superoxide dismutase [Mn/Fe]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.749 |
| dnaJ | soxR | SRM1_00810 | SRM1_03817 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | Redox-sensitive transcriptional activator SoxR. | 0.593 |
| hmrR_2 | cbpA | SRM1_00764 | SRM1_00641 | HTH-type transcriptional regulator HmrR. | Curved DNA-binding protein. | 0.593 |
| hmrR_2 | dnaJ | SRM1_00764 | SRM1_00810 | HTH-type transcriptional regulator HmrR. | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 0.593 |
| hmrR_2 | rpfC_1 | SRM1_00764 | SRM1_02802 | HTH-type transcriptional regulator HmrR. | Sensory/regulatory protein RpfC. | 0.483 |
| hmrR_2 | rpoB | SRM1_00764 | SRM1_05186 | HTH-type transcriptional regulator HmrR. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.476 |
| hmrR_2 | rpoS | SRM1_00764 | SRM1_01160 | HTH-type transcriptional regulator HmrR. | RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | 0.429 |
| hmrR_2 | soxR | SRM1_00764 | SRM1_03817 | HTH-type transcriptional regulator HmrR. | Redox-sensitive transcriptional activator SoxR. | 0.558 |
| rpfC_1 | hmrR_2 | SRM1_02802 | SRM1_00764 | Sensory/regulatory protein RpfC. | HTH-type transcriptional regulator HmrR. | 0.483 |
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