STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEL32067.1Hypothetical protein. (181 aa)    
Predicted Functional Partners:
livQ
6'''-hydroxyparomomycin C oxidase.
 
  
 0.970
calB
Coniferyl aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
  
 0.936
CEL32065.1
Bacterial regulatory proteins, tetR family.
 
  
 0.829
CEL28521.1
Alpha/beta hydrolase family protein.
  
     0.707
CEL30696.1
Hypothetical protein.
  
     0.683
mcbR
HTH-type transcriptional regulator McbR.
  
     0.649
CEL29064.1
Hypothetical protein; Alanine racemase, N-terminal domain.
  
     0.585
CEL27884.1
Hypothetical protein.
  
     0.578
betI_1
HTH-type transcriptional regulator BetI.
  
     0.517
ycgR
Flagellar brake protein YcgR.
  
     0.512
Your Current Organism:
Pseudomonas fluorescens
NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5
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