STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI74482.1Tripartite ATP-independent transporter solute receptor, DctP family. (332 aa)    
Predicted Functional Partners:
SDI74449.1
TRAP transporter, DctM subunit.
 
 0.972
SDI74422.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 
 0.957
SDH94250.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 
 0.882
SDH94226.1
TRAP transporter, DctM subunit.
 
 0.866
SDI74400.1
TRAP transporter, DctM subunit.
 
 0.850
SDI59363.1
TRAP transporter, DctM subunit.
  
  0.830
SDI60304.1
TRAP transporter, DctM subunit.
  
  0.775
SDI60711.1
TRAP transporter, 4TM/12TM fusion protein.
  
  
  0.756
SDI74345.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
     0.726
SDI74371.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
 
 0.641
Your Current Organism:
Pseudomonas flavescens
NCBI taxonomy Id: 29435
Other names: ATCC 51555, CCUG 49622, CFBP 5586, CIP 104204, DSM 12071, JCM 21586, LMG 18387, LMG:18387, NBRC 103044, NCPPB 3063, P. flavescens, strain B62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.