STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_06262COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain. (300 aa)    
Predicted Functional Partners:
rps5p
30S ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy.
  
 
 0.999
rps3p
30S ribosomal protein S3P; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
  
 
 0.999
rps19p
30S ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
    
 0.999
C481_15555
Hypothetical protein; COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module.
   
 0.999
C481_17637
COG1094 Predicted RNA-binding protein (contains KH domains).
  
 
 0.999
rps6e
COG2125 Ribosomal protein S6E (S10); Belongs to the eukaryotic ribosomal protein eS6 family.
  
 
  0.998
rps3ae
COG1890 Ribosomal protein S3AE; Belongs to the eukaryotic ribosomal protein eS1 family.
  
 
 0.998
rps11p
30S ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.
  
 
 0.997
rps15p
COG0184 Ribosomal protein S15P/S13E.
  
 
 0.997
rps4p
30S ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
  0.996
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.