STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZOSMA_50G00500Regulator of chromosome condensation (RCC1) family protein. (802 aa)    
Predicted Functional Partners:
ZOSMA_49G00310
Ubiquitin-protein ligase 4.
   
 
 0.688
A0A0K9PX68
Ubiquitin-protein ligase 4.
   
 
 0.688
A0A0K9PV95
Ubiquitin-activating enzyme E1 2; Belongs to the ubiquitin-activating E1 family.
   
 0.650
ZOSMA_1G02900
Putative 26S proteasome non-atpase regulatory subunit.
    
 
 0.597
ZOSMA_44G00420
Guanylate kinase.
    
  0.589
ZOSMA_35G00290
Guanylate kinase.
    
  0.589
ZOSMA_65G00960
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.
   
 0.581
ZOSMA_32G00890
NF-X1-type zinc finger protein NFXL1.
     
 0.575
ZOSMA_28G00280
NF-X1-type zinc finger protein NFXL2.
     
 0.575
A0A0K9Q4X1
Ubiquitin-like modifier-activating enzyme 5.
   
 0.551
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.