STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZOSMA_4G01900ATP dependent RNA helicase. (511 aa)    
Predicted Functional Partners:
ZOSMA_75G00440
C2H2 zinc finger protein.
    
 
 0.962
ZOSMA_56G00360
Uncharacterized protein.
    
 
 0.961
ZOSMA_48G00060
Inositol-pentakisphosphate 2-kinase; Phosphorylates Ins(1,3,4,5,6)P5 at position 2 to form Ins(1,2,3,4,5,6)P6 (InsP6 or phytate).
    
  0.820
ZOSMA_55G00100
RuvB-like helicase; Belongs to the RuvB family.
   
   0.601
A0A0K9PG65
DEAD-box ATP-dependent RNA helicase 50.
  
0.580
ZOSMA_85G01110
DEAD-box ATP-dependent RNA helicase 7.
  
0.575
ZOSMA_5G01120
DEAD-box ATP-dependent RNA helicase 50.
  
0.572
ZOSMA_25G01130
DEAD-box ATP-dependent RNA helicase 53.
  
0.570
A0A0K9PQ31
DEAD-box ATP-dependent RNA helicase 7; Belongs to the DEAD box helicase family.
  
0.567
A0A0K9P022
DEAD-box ATP-dependent RNA helicase 53.
  
0.565
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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