STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZOSMA_38G00640tRNA/rRNA methyltransferase (SpoU) family protein. (1813 aa)    
Predicted Functional Partners:
ZOSMA_72G00110
Transducin/WD40 repeat-like superfamily protein.
   
    0.878
ZOSMA_15G01060
TRUD domain-containing protein.
   
   0.873
ZOSMA_24G01530
ATP-dependent RNA helicase DOB1.
   
    0.851
A0A0K9PZL4
ATP-dependent RNA helicase DOB1.
   
    0.851
ZOSMA_23G00660
Iojap-like protein.
   
 
 0.844
ZOSMA_74G01030
Putative WD-repeat protein.
   
    0.842
A0A0K9P9J3
50S ribosomal protein L17, chloroplastic; Belongs to the bacterial ribosomal protein bL17 family.
  
 
 0.817
A0A0K9PLJ2
50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
  
 
 0.817
ZOSMA_29G01120
54S ribosomal protein L4, mitochondrial.
   
 
 0.816
A0A0K9PBX2
54S ribosomal protein L4, mitochondrial.
   
 
 0.816
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.