ZOSMA_31G01060 protein (Zostera marina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ZOSMA_31G01060

ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (875 aa)

Predicted Functional Partners:

ZOSMA_42G00360

0.998

A0A0K9PF59

0.998

A0A0K9PTY7

0.998

ZOSMA_58G00210

0.997

ZOSMA_50G00690

0.997

ZOSMA_36G00380

0.997

A0A0K9PDW1

0.997

ZOSMA_75G00760

0.996

A0A0K9PRG0

0.996

A0A0K9PTF3

0.996

Your Current Organism:

Zostera marina

NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0K9PDW1	A0A0K9PF59	A0A0K9PDW1	A0A0K9PF59	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	Flap endonuclease 1.	0.963
A0A0K9PDW1	A0A0K9PRG0	A0A0K9PDW1	A0A0K9PRG0	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	Tudor domain-containing protein 3.	0.799
A0A0K9PDW1	A0A0K9PTF3	A0A0K9PDW1	A0A0K9PTF3	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	DNA repair and recombination protein radA.	0.861
A0A0K9PDW1	A0A0K9PTY7	A0A0K9PDW1	A0A0K9PTY7	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.677
A0A0K9PDW1	ZOSMA_31G01060	A0A0K9PDW1	A0A0K9P8X4	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.997
A0A0K9PDW1	ZOSMA_36G00380	A0A0K9PDW1	A0A0K9P5Y7	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	Putative Replication protein A 30 kDa subunit.	0.724
A0A0K9PDW1	ZOSMA_42G00360	A0A0K9PDW1	A0A0K9P479	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	Flap endonuclease 1.	0.963
A0A0K9PDW1	ZOSMA_58G00210	A0A0K9PDW1	A0A0K9NUW0	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	Putative Replication protein A 30 kDa subunit.	0.724
A0A0K9PDW1	ZOSMA_75G00760	A0A0K9PDW1	A0A0K9NPF5	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	ERCC4 domain-containing protein.	0.804
A0A0K9PF59	A0A0K9PDW1	A0A0K9PF59	A0A0K9PDW1	Flap endonuclease 1.	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	0.963
A0A0K9PF59	A0A0K9PRG0	A0A0K9PF59	A0A0K9PRG0	Flap endonuclease 1.	Tudor domain-containing protein 3.	0.825
A0A0K9PF59	A0A0K9PTF3	A0A0K9PF59	A0A0K9PTF3	Flap endonuclease 1.	DNA repair and recombination protein radA.	0.877
A0A0K9PF59	A0A0K9PTY7	A0A0K9PF59	A0A0K9PTY7	Flap endonuclease 1.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.977
A0A0K9PF59	ZOSMA_31G01060	A0A0K9PF59	A0A0K9P8X4	Flap endonuclease 1.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.998
A0A0K9PF59	ZOSMA_36G00380	A0A0K9PF59	A0A0K9P5Y7	Flap endonuclease 1.	Putative Replication protein A 30 kDa subunit.	0.752
A0A0K9PF59	ZOSMA_42G00360	A0A0K9PF59	A0A0K9P479	Flap endonuclease 1.	Flap endonuclease 1.	0.855
A0A0K9PF59	ZOSMA_50G00690	A0A0K9PF59	A0A0K9P0D0	Flap endonuclease 1.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.963
A0A0K9PF59	ZOSMA_58G00210	A0A0K9PF59	A0A0K9NUW0	Flap endonuclease 1.	Putative Replication protein A 30 kDa subunit.	0.752
A0A0K9PF59	ZOSMA_75G00760	A0A0K9PF59	A0A0K9NPF5	Flap endonuclease 1.	ERCC4 domain-containing protein.	0.909
A0A0K9PRG0	A0A0K9PDW1	A0A0K9PRG0	A0A0K9PDW1	Tudor domain-containing protein 3.	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	0.799