STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZOSMA_28G00730Cullin domain-containing protein; Belongs to the cullin family. (189 aa)    
Predicted Functional Partners:
A0A0K9PCA9
E3 ubiquitin-protein ligase PRT1.
    
 0.991
ZOSMA_49G00550
Putative Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.934
ZOSMA_10G01490
COP9 signalosome complex subunit 5b.
    
 0.927
ZOSMA_40G00670
RING-box protein.
    
 0.925
ZOSMA_40G00680
RING-box protein 1a.
    
 0.925
A0A0K9PCK9
Cullin-associated NEDD8-dissociated protein.
   
 0.917
A0A0K9PD17
Uncharacterized protein.
   
 0.917
ZOSMA_35G00050
F-box protein 7.
    
 0.905
ZOSMA_55G00360
Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity.
    
 0.884
A0A0K9P1B9
Ubiquitin-conjugating enzyme 13, E2; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.884
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.