STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0K9PDN5RING finger protein. (247 aa)    
Predicted Functional Partners:
ZOSMA_49G00310
Ubiquitin-protein ligase 4.
     
 0.734
A0A0K9PX68
Ubiquitin-protein ligase 4.
     
 0.734
ZOSMA_37G01000
Cleavage and polyadenylation specificity factor subunit 2.
   
 
  0.671
A0A0K9P2H9
Ubiquitin-40S ribosomal protein S27a-1.
    
  0.598
ZOSMA_24G01040
Ubiquitin-40S ribosomal protein S27a.
    
  0.598
ZOSMA_65G00960
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.
    
  0.542
A0A0K9Q4X1
Ubiquitin-like modifier-activating enzyme 5.
    
  0.542
A0A0K9P5J3
ThiF domain-containing protein.
    
  0.473
A0A0K9PLZ1
NEDD8-activating enzyme E1 catalytic subunit.
    
  0.473
A0A0K9PKA9
Cellulose synthase, family GT2; Belongs to the glycosyltransferase 2 family.
  
 
   0.453
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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