STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MICPUN_99233Malate dehydrogenase. (332 aa)    
Predicted Functional Partners:
FUM-1
Putative fumarate hydratase class1-malate <.
  
 
 0.987
CIS1
Citrate synthase; Belongs to the citrate synthase family.
  
 0.986
CIS2
Citrate synthase; Belongs to the citrate synthase family.
  
 0.984
PEPC
Phosphoenolpyruvate carboxylase.
     
 0.977
MICPUN_81102
Malic enzyme.
  
 0.976
MICPUN_62430
NADP dependent malic enzyme, chloroplast.
  
 0.976
NADP-ME_3
Malic oxidoreductase mitochondrial.
  
 0.976
ASP1
Aspartate aminotransferase.
   
 0.974
FUM-2
Fumarate hydratase.
  
 0.966
PYC
Pyruvate carboyxlase.
  
 0.965
Your Current Organism:
Micromonas commoda
NCBI taxonomy Id: 296587
Other names: CCMP2709, M. commoda, Micromonas commoda van Baren, Bachy & Worden, 2016, Micromonas pusilla NOUM17, Micromonas pusilla RCC299, Micromonas sp. CCMP1195, Micromonas sp. CCMP1764, Micromonas sp. CCMP492, Micromonas sp. NEPCC29, Micromonas sp. RCC 299, Micromonas sp. RCC299, Micromonas sp. RCC372, Micromonas sp. RCC447, Micromonas sp. RCC448, Micromonas sp. RCC449, Micromonas sp. RCC450, Micromonas sp. RCC472, Micromonas sp. RCC570, Micromonas sp. RCC676, Micromonas sp. RCC803, Micromonas sp. RCC804, Micromonas sp. RCC805, Micromonas sp. RCC808, Micromonas sp. RCC836, RCC299
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