STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MICPUN_83469Histone H2A; Belongs to the histone H2A family. (122 aa)    
Predicted Functional Partners:
MICPUN_81444
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
 
 0.942
MICPUN_101755
Histone H2B; Belongs to the histone H2B family.
 
 0.912
MICPUN_81107
Histone H2B; Belongs to the histone H2B family.
 
 0.911
MICPUN_101593
ARID/BRIGHT DNA binding domain protein.
   
 0.878
H2A
Histone H2A; Belongs to the histone H2A family.
  
0.830
MICPUN_63353
Uncharacterized protein.
    
 0.829
MICPUN_58772
Histone H3; Belongs to the histone H3 family.
 
 0.800
MICPUN_82590
Ubiquitin-like domain-containing protein.
    
 0.780
MICPUN_90428
Ubiquitin-like domain-containing protein.
   
  0.768
MICPUN_62379
Fe2OG dioxygenase domain-containing protein.
   
 0.741
Your Current Organism:
Micromonas commoda
NCBI taxonomy Id: 296587
Other names: CCMP2709, M. commoda, Micromonas commoda van Baren, Bachy & Worden, 2016, Micromonas pusilla NOUM17, Micromonas pusilla RCC299, Micromonas sp. CCMP1195, Micromonas sp. CCMP1764, Micromonas sp. CCMP492, Micromonas sp. NEPCC29, Micromonas sp. RCC 299, Micromonas sp. RCC299, Micromonas sp. RCC372, Micromonas sp. RCC447, Micromonas sp. RCC448, Micromonas sp. RCC449, Micromonas sp. RCC450, Micromonas sp. RCC472, Micromonas sp. RCC570, Micromonas sp. RCC676, Micromonas sp. RCC803, Micromonas sp. RCC804, Micromonas sp. RCC805, Micromonas sp. RCC808, Micromonas sp. RCC836, RCC299
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.