MICPUN_61000 protein (Micromonas commoda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MICPUN_61000

DEAD/DEAH box helicase. (1360 aa)

Predicted Functional Partners:

MICPUN_59865

0.995

MICPUN_65751

0.992

MICPUN_57858

0.991

MICPUN_83748

0.990

MICPUN_63712

0.983

MICPUN_77618

0.978

MICPUN_93101

0.978

EF-TU

0.975

MICPUN_107163

0.975

MICPUN_97374

0.973

Your Current Organism:

Micromonas commoda

NCBI taxonomy Id: 296587
Other names: CCMP2709, M. commoda, Micromonas commoda van Baren, Bachy & Worden, 2016, Micromonas pusilla NOUM17, Micromonas pusilla RCC299, Micromonas sp. CCMP1195, Micromonas sp. CCMP1764, Micromonas sp. CCMP492, Micromonas sp. NEPCC29, Micromonas sp. RCC 299, Micromonas sp. RCC299, Micromonas sp. RCC372, Micromonas sp. RCC447, Micromonas sp. RCC448, Micromonas sp. RCC449, Micromonas sp. RCC450, Micromonas sp. RCC472, Micromonas sp. RCC570, Micromonas sp. RCC676, Micromonas sp. RCC803, Micromonas sp. RCC804, Micromonas sp. RCC805, Micromonas sp. RCC808, Micromonas sp. RCC836, RCC299

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EF-TU	MICPUN_107163	C1E0B7	C1FJT4	Elongation factor tu gtp-binding domain protein 2.	MPN domain-containing protein.	0.996
EF-TU	MICPUN_57858	C1E0B7	C1E400	Elongation factor tu gtp-binding domain protein 2.	Cir_N domain-containing protein.	0.904
EF-TU	MICPUN_59865	C1E0B7	C1E9W7	Elongation factor tu gtp-binding domain protein 2.	WD_REPEATS_REGION domain-containing protein.	0.975
EF-TU	MICPUN_61000	C1E0B7	C1FGU7	Elongation factor tu gtp-binding domain protein 2.	DEAD/DEAH box helicase.	0.975
EF-TU	MICPUN_63712	C1E0B7	C1EF99	Elongation factor tu gtp-binding domain protein 2.	Slu7 domain-containing protein.	0.918
EF-TU	MICPUN_65751	C1E0B7	C1FIV4	Elongation factor tu gtp-binding domain protein 2.	MI domain-containing protein.	0.974
EF-TU	MICPUN_77618	C1E0B7	C1FDL9	Elongation factor tu gtp-binding domain protein 2.	Uncharacterized protein.	0.981
EF-TU	MICPUN_83748	C1E0B7	C1EA02	Elongation factor tu gtp-binding domain protein 2.	Uncharacterized protein.	0.964
EF-TU	MICPUN_93101	C1E0B7	C1FE46	Elongation factor tu gtp-binding domain protein 2.	Suf domain-containing protein.	0.979
EF-TU	MICPUN_97374	C1E0B7	C1E601	Elongation factor tu gtp-binding domain protein 2.	Uncharacterized protein.	0.978
MICPUN_107163	EF-TU	C1FJT4	C1E0B7	MPN domain-containing protein.	Elongation factor tu gtp-binding domain protein 2.	0.996
MICPUN_107163	MICPUN_57858	C1FJT4	C1E400	MPN domain-containing protein.	Cir_N domain-containing protein.	0.949
MICPUN_107163	MICPUN_59865	C1FJT4	C1E9W7	MPN domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.967
MICPUN_107163	MICPUN_61000	C1FJT4	C1FGU7	MPN domain-containing protein.	DEAD/DEAH box helicase.	0.975
MICPUN_107163	MICPUN_63712	C1FJT4	C1EF99	MPN domain-containing protein.	Slu7 domain-containing protein.	0.976
MICPUN_107163	MICPUN_65751	C1FJT4	C1FIV4	MPN domain-containing protein.	MI domain-containing protein.	0.963
MICPUN_107163	MICPUN_77618	C1FJT4	C1FDL9	MPN domain-containing protein.	Uncharacterized protein.	0.974
MICPUN_107163	MICPUN_83748	C1FJT4	C1EA02	MPN domain-containing protein.	Uncharacterized protein.	0.945
MICPUN_107163	MICPUN_93101	C1FJT4	C1FE46	MPN domain-containing protein.	Suf domain-containing protein.	0.971
MICPUN_107163	MICPUN_97374	C1FJT4	C1E601	MPN domain-containing protein.	Uncharacterized protein.	0.973

page 1 of 6

Server load: low (26%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About