STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MICPUN_102719PKS_ER domain-containing protein. (322 aa)    
Predicted Functional Partners:
MICPUN_55049
Uncharacterized protein.
  
 0.713
PKS1
Modular polyketide synthase type I.
  
 0.713
MICPUN_85187
Uncharacterized protein.
  
 0.587
MICPUN_88011
Uncharacterized protein.
  
 0.587
MICPUN_66596
PKS_ER domain-containing protein.
  
0.481
MICPUN_81646
Fe-ADH domain-containing protein.
     
 0.479
MICPUN_79223
4-hydroxyphenylpyruvate dioxygenase.
     
 0.462
Nia
Nitrate reductase apoenzyme.
  
 
 0.433
MICPUN_68463
Uncharacterized protein.
  
 
 0.433
MICPUN_56785
Carrier domain-containing protein.
   
 
 0.421
Your Current Organism:
Micromonas commoda
NCBI taxonomy Id: 296587
Other names: CCMP2709, M. commoda, Micromonas commoda van Baren, Bachy & Worden, 2016, Micromonas pusilla NOUM17, Micromonas pusilla RCC299, Micromonas sp. CCMP1195, Micromonas sp. CCMP1764, Micromonas sp. CCMP492, Micromonas sp. NEPCC29, Micromonas sp. RCC 299, Micromonas sp. RCC299, Micromonas sp. RCC372, Micromonas sp. RCC447, Micromonas sp. RCC448, Micromonas sp. RCC449, Micromonas sp. RCC450, Micromonas sp. RCC472, Micromonas sp. RCC570, Micromonas sp. RCC676, Micromonas sp. RCC803, Micromonas sp. RCC804, Micromonas sp. RCC805, Micromonas sp. RCC808, Micromonas sp. RCC836, RCC299
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