STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpro_0032Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; Belongs to the RuBisCO large chain family. (428 aa)    
Predicted Functional Partners:
Bpro_0031
Type III effector Hrp-dependent outers domain protein.
 
   
 0.949
Bpro_0033
Conserved hypothetical protein.
 
     0.915
gph
Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
    
 0.915
Bpro_3658
HAD-superfamily hydrolase, subfamily IA, variant 1.
    
 0.906
Bpro_0093
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; Belongs to the RuBisCO large chain family.
  
  
 
0.905
Bpro_0087
Conserved hypothetical protein.
 
   
 0.791
Bpro_0094
Type III effector Hrp-dependent outers domain protein.
 
   
 0.785
Bpro_0036
Transcriptional regulator, LacI family.
 
    0.741
Bpro_0034
TRAP C4-dicarboxylate transport system permease DctM subunit.
 
     0.672
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.558
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.