STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpro_0191Protein of unknown function DUF6, transmembrane. (309 aa)    
Predicted Functional Partners:
Bpro_0192
Major facilitator superfamily MFS_1.
       0.802
Bpro_0190
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
  
    0.700
Bpro_2315
Putative transmembrane protein.
  
     0.640
Bpro_0189
Glutathione-dependent formaldehyde-activating, GFA.
       0.558
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
    0.554
Bpro_1326
Hypothetical protein.
  
     0.531
Bpro_1244
Putative transmembrane protein.
  
     0.517
Bpro_3661
Putative porphyrin biosynthesis related protein.
 
     0.510
Bpro_1688
Putative membrane protein.
  
     0.485
Bpro_4469
Transporter, CPA2 family; TC 2.A.37.
 
  
 0.476
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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