STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpro_1021Type I secretion membrane fusion protein, HlyD. (444 aa)    
Predicted Functional Partners:
Bpro_1020
Type I secretion system ATPase, HlyB.
 
 0.977
Bpro_0300
ABC transporter related protein.
 
 0.903
Bpro_1018
Hypothetical protein.
 
  
 0.856
Bpro_0720
Type I secretion outer membrane protein, TolC.
 
 
 0.847
Bpro_0310
Type I secretion outer membrane protein, TolC.
 
 
 0.812
Bpro_1022
Type I secretion outer membrane protein, TolC.
 
 
 0.811
Bpro_1023
RTX toxin-activating protein C.
 
   
 0.799
Bpro_1019
Hypothetical protein.
       0.693
Bpro_1017
Hypothetical protein.
       0.683
Bpro_0309
Conserved hypothetical protein.
 
  
 0.664
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.