STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemLGlutamate-1-semialdehyde 2,1-aminomutase. (442 aa)    
Predicted Functional Partners:
Bpro_0245
Porphobilinogen synthase; Belongs to the ALAD family.
 
 
 0.987
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
 0.984
Bpro_1467
Glutamate-1-semialdehyde 2,1-aminomutase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 
0.922
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
 
  
 0.879
Bpro_1134
Putative phosphomethylpyrimidine kinase.
  
  
 0.822
Bpro_2765
uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
 
   
 0.694
Bpro_2860
Aspartate kinase; Belongs to the aspartokinase family.
   
 
 0.680
Bpro_3281
uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
 
   
 0.680
Bpro_0539
Cytochrome c biogenesis protein, transmembrane region.
  
  
 0.624
Bpro_1135
Rubredoxin-type Fe(Cys)4 protein.
       0.598
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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