STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhmDMandelate racemase/muconate lactonizing enzyme; Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy- L-rhamnonate (KDR). (395 aa)    
Predicted Functional Partners:
Bpro_1491
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
  0.939
Bpro_2836
Mandelate racemase/muconate lactonizing enzyme.
  
  
 
0.920
Bpro_3960
Short-chain dehydrogenase/reductase SDR.
     
  0.900
Bpro_1492
Major facilitator superfamily MFS_1.
 
  
 0.750
Bpro_4404
Muconate cycloisomerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.593
Bpro_1490
5-carboxymethyl-2-hydroxymuconate delta-isomerase.
  
  
 0.455
queE
Conserved hypothetical protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.
       0.422
Bpro_1489
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.415
Bpro_1495
6-pyruvoyl tetrahydropterin synthase and hypothetical protein.
       0.412
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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