STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpro_29124-aminobutyrate aminotransferase apoenzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (430 aa)    
Predicted Functional Partners:
Bpro_2917
Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.938
Bpro_0421
Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
0.923
Bpro_0055
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.921
Bpro_0062
Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.921
Bpro_0086
2,5-dioxopentanoate dehydrogenase (NAD+).
  
 0.921
Bpro_0091
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.921
Bpro_2290
Aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.
 
 0.921
Bpro_2450
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.921
Bpro_3952
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.921
Bpro_4547
Methylmalonate-semialdehyde dehydrogenase (acylating).
  
 0.921
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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