D7SLV6_VITVI protein (Vitis vinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D7SLV6_VITVI

Uncharacterized protein. (309 aa)

Predicted Functional Partners:

F6H8H2_VITVI

0.658

F6H7M1_VITVI

0.581

F6I0S8_VITVI

0.571

D7SYB9_VITVI

0.569

F6HUF4_VITVI

0.559

D7T975_VITVI

0.492

D7SQK3_VITVI

0.483

F6I0J9_VITVI

0.483

F6HDZ3_VITVI

0.471

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7SLV6_VITVI	D7SQK3_VITVI	D7SLV6	D7SQK3	Uncharacterized protein.	F-box domain-containing protein.	0.483
D7SLV6_VITVI	D7SYB9_VITVI	D7SLV6	D7SYB9	Uncharacterized protein.	Uncharacterized protein.	0.569
D7SLV6_VITVI	D7T975_VITVI	D7SLV6	D7T975	Uncharacterized protein.	Uncharacterized protein.	0.492
D7SLV6_VITVI	F6H7M1_VITVI	D7SLV6	F6H7M1	Uncharacterized protein.	Uncharacterized protein.	0.581
D7SLV6_VITVI	F6H8H2_VITVI	D7SLV6	F6H8H2	Uncharacterized protein.	C2H2-type domain-containing protein.	0.658
D7SLV6_VITVI	F6HDZ3_VITVI	D7SLV6	F6HDZ3	Uncharacterized protein.	Alba domain-containing protein.	0.471
D7SLV6_VITVI	F6HUF4_VITVI	D7SLV6	F6HUF4	Uncharacterized protein.	HAP2-GCS1 domain-containing protein.	0.559
D7SLV6_VITVI	F6I0J9_VITVI	D7SLV6	F6I0J9	Uncharacterized protein.	Lgl_C domain-containing protein.	0.483
D7SLV6_VITVI	F6I0S8_VITVI	D7SLV6	F6I0S8	Uncharacterized protein.	Uncharacterized protein.	0.571
D7SQK3_VITVI	D7SLV6_VITVI	D7SQK3	D7SLV6	F-box domain-containing protein.	Uncharacterized protein.	0.483
D7SQK3_VITVI	D7SYB9_VITVI	D7SQK3	D7SYB9	F-box domain-containing protein.	Uncharacterized protein.	0.444
D7SQK3_VITVI	F6H7M1_VITVI	D7SQK3	F6H7M1	F-box domain-containing protein.	Uncharacterized protein.	0.491
D7SYB9_VITVI	D7SLV6_VITVI	D7SYB9	D7SLV6	Uncharacterized protein.	Uncharacterized protein.	0.569
D7SYB9_VITVI	D7SQK3_VITVI	D7SYB9	D7SQK3	Uncharacterized protein.	F-box domain-containing protein.	0.444
D7SYB9_VITVI	F6H7M1_VITVI	D7SYB9	F6H7M1	Uncharacterized protein.	Uncharacterized protein.	0.579
D7SYB9_VITVI	F6HUF4_VITVI	D7SYB9	F6HUF4	Uncharacterized protein.	HAP2-GCS1 domain-containing protein.	0.601
D7SYB9_VITVI	F6I0S8_VITVI	D7SYB9	F6I0S8	Uncharacterized protein.	Uncharacterized protein.	0.486
D7T975_VITVI	D7SLV6_VITVI	D7T975	D7SLV6	Uncharacterized protein.	Uncharacterized protein.	0.492
F6H7M1_VITVI	D7SLV6_VITVI	F6H7M1	D7SLV6	Uncharacterized protein.	Uncharacterized protein.	0.581
F6H7M1_VITVI	D7SQK3_VITVI	F6H7M1	D7SQK3	Uncharacterized protein.	F-box domain-containing protein.	0.491