STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D7TZZ9_VITVIUncharacterized protein. (314 aa)    
Predicted Functional Partners:
F6HA17_VITVI
Uncharacterized protein.
   
 0.707
D7SVD9_VITVI
Uncharacterized protein.
   
 0.702
F6GXT0_VITVI
Uncharacterized protein.
   
 0.665
F6HFD4_VITVI
Lactamase_B domain-containing protein.
    
 0.631
D7SPZ2_VITVI
Beta-Casp domain-containing protein.
    
 0.620
VITISV_024186
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
  0.523
D7T726_VITVI
TPR_REGION domain-containing protein.
   
 0.518
VITISV_017448
RPOL4c domain-containing protein.
   
  0.517
F6I5Z0_VITVI
RPOLD domain-containing protein.
   
  0.512
D7SV69_VITVI
RNA_pol_L_2 domain-containing protein.
    
  0.500
Your Current Organism:
Vitis vinifera
NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape
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