STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D7U379_VITVIPhotosystem II reaction center Psb28 protein; Belongs to the Psb28 family. (179 aa)    
Predicted Functional Partners:
F6HIG7_VITVI
Uncharacterized protein.
  
 
 0.906
F6HZU4_VITVI
Uncharacterized protein.
  
 
 0.881
F6HLW0_VITVI
Uncharacterized protein.
   
 
 0.836
VITISV_028819
PsaL domain-containing protein.
  
 
 0.820
F6H029_VITVI
Uncharacterized protein.
  
 
 0.820
F6I229_VITVI
Uncharacterized protein.
  
 
 0.818
D7TWV6_VITVI
Ferredoxin-thioredoxin reductase, catalytic chain; Catalytic subunit of the ferredoxin-thioredoxin reductase (FTR), which catalyzes the two-electron reduction of thioredoxins by the electrons provided by reduced ferredoxin.
  
  
 0.817
D7T9G8_VITVI
PSII_BNR domain-containing protein.
  
  
 0.808
F6HMK9_VITVI
Uncharacterized protein.
  
  
 0.803
VITISV_036477
Uncharacterized protein.
  
 
 0.801
Your Current Organism:
Vitis vinifera
NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape
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