STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6H3U0_VITVIUncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (393 aa)    
Predicted Functional Partners:
D7THA3_VITVI
Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.
   
  
 0.685
F6H3P9_VITVI
SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
  
 0.634
E0CRP9_VITVI
Queuine tRNA-ribosyltransferase catalytic subunit 1; Catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, formi [...]
   
  
 0.608
D7TRL1_VITVI
SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
  
 0.587
D7U0L6_VITVI
Uncharacterized protein.
   
  
 0.587
F6HUY1_VITVI
tRNA (adenine(58)-N(1))-methyltransferase.
   
  
 0.587
F6H7M2_VITVI
SAM_MT_TRM5_TYW2 domain-containing protein.
   
  
 0.583
MTBC1_VITVI
Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1; In the C-terminal section; belongs to the HAD-like hydrolase superfamily. MasA/MtnC family.
   
  
 0.582
MTBC2_VITVI
Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 2; In the C-terminal section; belongs to the HAD-like hydrolase superfamily. MasA/MtnC family.
   
  
 0.582
D7TI52_VITVI
HNHc domain-containing protein.
  
  
 0.581
Your Current Organism:
Vitis vinifera
NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape
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