STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6H9Y5_VITVIProtein kinase domain-containing protein. (517 aa)    
Predicted Functional Partners:
F6H1I9_VITVI
Uncharacterized protein; Belongs to the cyclin family.
    
 0.635
D7TXX3_VITVI
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.597
D7U9R4_VITVI
CYCLIN domain-containing protein; Belongs to the cyclin family.
    
 0.592
F6I5Z0_VITVI
RPOLD domain-containing protein.
   
 0.577
D7T6U9_VITVI
CYCLIN domain-containing protein; Belongs to the cyclin family.
    
 0.535
D7T6V0_VITVI
Uncharacterized protein.
    
 0.535
F6H2R2_VITVI
Uncharacterized protein; Belongs to the cyclin family.
    
 0.535
F6H4Q9_VITVI
Uncharacterized protein; Belongs to the cyclin family.
    
 0.535
D7SX63_VITVI
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]
     
 0.528
F6HLW1_VITVI
CPSF_A domain-containing protein.
    
 
 0.528
Your Current Organism:
Vitis vinifera
NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape
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