STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AATN-acetyltransferase domain-containing protein. (180 aa)    
Predicted Functional Partners:
D7T8R8_VITVI
Bet_v_1 domain-containing protein.
      
 0.613
F6HFG9_VITVI
Bet_v_1 domain-containing protein.
      
 0.613
F6I0T8_VITVI
Aa_trans domain-containing protein.
   
 0.501
F6H0C2_VITVI
Uncharacterized protein.
   
 0.492
F6I2D7_VITVI
Aa_trans domain-containing protein.
   
 0.492
D7U4U8_VITVI
Aa_trans domain-containing protein.
    
 0.484
E0CPD0_VITVI
Aa_trans domain-containing protein.
    
 0.484
D7SJR7_VITVI
CCT domain-containing protein.
    
 
 0.482
VITISV_009851
Histone H2A; Belongs to the histone H2A family.
    
 0.474
VITISV_009852
Histone H2A; Belongs to the histone H2A family.
    
 0.474
Your Current Organism:
Vitis vinifera
NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape
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