F6HQB7_VITVI protein (Vitis vinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

F6HQB7_VITVI

Uncharacterized protein. (182 aa)

Predicted Functional Partners:

D7T204_VITVI

0.650

D7U483_VITVI

0.637

F6H2M3_VITVI

0.593

F6HIM6_VITVI

0.593

VITISV_023403

0.585

D7TIU8_VITVI

0.585

D7TU83_VITVI

0.569

F6H5U6_VITVI

0.485

D7TJZ9_VITVI

0.483

D7TZW4_VITVI

0.483

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7T204_VITVI	F6H5U6_VITVI	D7T204	F6H5U6	CP-type G domain-containing protein.	Uncharacterized protein.	0.650
D7T204_VITVI	F6HQB7_VITVI	D7T204	F6HQB7	CP-type G domain-containing protein.	Uncharacterized protein.	0.650
D7TIU8_VITVI	D7TJZ9_VITVI	D7TIU8	D7TJZ9	Gln-synt_C domain-containing protein; Belongs to the glutamine synthetase family.	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	0.416
D7TIU8_VITVI	D7TZW4_VITVI	D7TIU8	D7TZW4	Gln-synt_C domain-containing protein; Belongs to the glutamine synthetase family.	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	0.416
D7TIU8_VITVI	F6H2M3_VITVI	D7TIU8	F6H2M3	Gln-synt_C domain-containing protein; Belongs to the glutamine synthetase family.	TPR_REGION domain-containing protein.	0.600
D7TIU8_VITVI	F6HIM6_VITVI	D7TIU8	F6HIM6	Gln-synt_C domain-containing protein; Belongs to the glutamine synthetase family.	GRAS domain-containing protein; Belongs to the GRAS family.	0.564
D7TIU8_VITVI	F6HQB7_VITVI	D7TIU8	F6HQB7	Gln-synt_C domain-containing protein; Belongs to the glutamine synthetase family.	Uncharacterized protein.	0.585
D7TIU8_VITVI	VITISV_023403	D7TIU8	A5ANJ0	Gln-synt_C domain-containing protein; Belongs to the glutamine synthetase family.	GRAS domain-containing protein; Belongs to the GRAS family.	0.564
D7TJZ9_VITVI	D7TIU8_VITVI	D7TJZ9	D7TIU8	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Gln-synt_C domain-containing protein; Belongs to the glutamine synthetase family.	0.416
D7TJZ9_VITVI	D7TZW4_VITVI	D7TJZ9	D7TZW4	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	0.544
D7TJZ9_VITVI	F6H2M3_VITVI	D7TJZ9	F6H2M3	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	TPR_REGION domain-containing protein.	0.446
D7TJZ9_VITVI	F6HIM6_VITVI	D7TJZ9	F6HIM6	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	GRAS domain-containing protein; Belongs to the GRAS family.	0.446
D7TJZ9_VITVI	F6HQB7_VITVI	D7TJZ9	F6HQB7	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Uncharacterized protein.	0.483
D7TJZ9_VITVI	VITISV_023403	D7TJZ9	A5ANJ0	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	GRAS domain-containing protein; Belongs to the GRAS family.	0.485
D7TU83_VITVI	F6H5U6_VITVI	D7TU83	F6H5U6	Peptidylprolyl isomerase.	Uncharacterized protein.	0.575
D7TU83_VITVI	F6HQB7_VITVI	D7TU83	F6HQB7	Peptidylprolyl isomerase.	Uncharacterized protein.	0.569
D7TZW4_VITVI	D7TIU8_VITVI	D7TZW4	D7TIU8	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Gln-synt_C domain-containing protein; Belongs to the glutamine synthetase family.	0.416
D7TZW4_VITVI	D7TJZ9_VITVI	D7TZW4	D7TJZ9	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	0.544
D7TZW4_VITVI	F6H2M3_VITVI	D7TZW4	F6H2M3	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	TPR_REGION domain-containing protein.	0.446
D7TZW4_VITVI	F6HIM6_VITVI	D7TZW4	F6HIM6	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	GRAS domain-containing protein; Belongs to the GRAS family.	0.446