STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6I0N6_VITVIHistone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (502 aa)    
Predicted Functional Partners:
D7UAU1_VITVI
Uncharacterized protein.
   
 0.873
E0CQU8_VITVI
Uncharacterized protein.
   
 0.873
F6GWG2_VITVI
Uncharacterized protein.
   
 0.873
D7SXS2_VITVI
UBP-type domain-containing protein.
      
 0.833
F6I2S4_VITVI
WD_REPEATS_REGION domain-containing protein.
   
 0.826
F6H0N1_VITVI
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
   
 0.825
D7U001_VITVI
WD_REPEATS_REGION domain-containing protein.
   
 0.824
D7U551_VITVI
WD_REPEATS_REGION domain-containing protein.
   
 0.824
F6HGW0_VITVI
WD_REPEATS_REGION domain-containing protein.
   
 0.824
F6HDI3_VITVI
Uncharacterized protein.
    
 0.809
Your Current Organism:
Vitis vinifera
NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.