STRINGSTRING
VIT_00s0531g00040.t01 protein (Vitis vinifera) - STRING interaction network
"VIT_00s0531g00040.t01" - Uncharacterized protein in Vitis vinifera
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VIT_00s0531g00040.t01Uncharacterized protein; Oxidoreductase, 2OG-Fe(II) oxygenase family protein (245 aa)    
Predicted Functional Partners:
VIT_01s0010g03650.t01
Uncharacterized protein (285 aa)
           
  0.918
VIT_09s0002g04060.t01
Uncharacterized protein (949 aa)
       
 
  0.882
VIT_14s0081g00660.t01
Uncharacterized protein (258 aa)
     
   
  0.851
VIT_18s0001g09190.t01
Uncharacterized protein (144 aa)
       
 
  0.847
VIT_18s0001g09180.t01
Uncharacterized protein (804 aa)
       
 
  0.847
VIT_17s0000g07240.t01
Uncharacterized protein (711 aa)
     
 
  0.805
VIT_17s0000g07230.t01
Uncharacterized protein (1370 aa)
     
 
  0.805
VIT_14s0066g00880.t01
Uncharacterized protein (1275 aa)
     
 
  0.805
VIT_17s0000g06060.t01
Uncharacterized protein (418 aa)
     
      0.789
VIT_14s0081g00760.t01
Uncharacterized protein (316 aa)
     
      0.789
Your Current Organism:
Vitis vinifera
NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape
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