STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBPRA0041Hypothetical flagellin type B; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (426 aa)    
Predicted Functional Partners:
YPO0741
Hypothetical LafC; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.985
STY2169
Putative polar flagellar protein FlaJ; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.977
PBPRA0042
Hypothetical protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
 
 
 0.966
VPA0273
Hypothetical flagellar hook-associated protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.954
PBPRA0915
Putative flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
 
 
 0.945
VPA0274
Hypothetical FlgL flagellar hook-associated protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.944
VV0969
Hypothetical flagellar hook-associated protein FlgM; Predicted by orpheus program; predicted by glimmer program; Belongs to the flagella basal body rod proteins family.
 
  
 0.928
PSPTO193
Putative flagellar basal body rod protein FlgC; Predicted by orpheus program; predicted by glimmer program; Belongs to the flagella basal body rod proteins family.
 
  
 0.917
VV0974
Putative flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
  
 
0.916
YPO0715
Hypothetical puative flagellar motor switch protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.915
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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