STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WAVCConserved hypothetical protein; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family. (236 aa)    
Predicted Functional Partners:
PP4928
Hypothetical KDO transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
   
 0.990
XCC0992
Putative lipopolysaccharide biosynthesis protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 
 0.973
VV1000
Putative heat shock protein HtpG; Molecular chaperone. Has ATPase activity.
    
 0.968
YPO1265
Putative ATP-dependent helicase; Predicted by orpheus program; predicted by glimmer program.
  
 0.967
RSC0835
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 0.967
UDK
Putative uridine kinase; Predicted by orpheus program; predicted by glimmer program.
    
 0.948
PP1926
Hypothetical phosphatase; Predicted by orpheus program; predicted by glimmer program.
    
 0.902
BLL2800
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
   
 0.891
STP1
Hypothetical serine/threonine protein phosphatase; Predicted by orpheus program; predicted by glimmer program.
   
 0.882
S0048
Putative bis(5-nucleosyl)-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
 0.847
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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