STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HEMLPutative glutamate-1-semialdehyde 2,1-aminomutase; Predicted by orpheus program; predicted by glimmer program. (432 aa)    
Predicted Functional Partners:
HEMB
Putative delta-aminolevulinic acid dehydratase; Predicted by orpheus program; predicted by glimmer program; Belongs to the ALAD family.
 
 
 0.994
hemA
Putative glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
 0.989
HEMC
Putative porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
 
  
 0.918
PBPRB1818
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.887
MXCG
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.821
PFAA
Omega-3 polyunsaturated fatty acid synthase PfaA; Predicted by orpheus program; predicted by glimmer program.
     
 0.808
S3879
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.799
PFAC
Omega-3 polyunsaturated fatty acid synthase PfaC; Predicted by orpheus program; predicted by glimmer program; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
     
 0.769
PFAB
Omega-3 polyunsaturated fatty acid synthase PfaB; Predicted by orpheus program; predicted by glimmer program.
     
 0.753
T4028
Putative Uroporphyrinogen-III methylase; Predicted by orpheus program; predicted by glimmer program; Belongs to the precorrin methyltransferase family.
 
   
 0.749
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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