STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP0744Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (496 aa)    
Predicted Functional Partners:
RSP0743
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.999
BPP0729
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.993
VPA1027
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.985
CLPB
Putative ATPase with chaperone activity; Predicted by orpheus program; predicted by glimmer program; Belongs to the ClpA/ClpB family.
 
 
 0.981
VPA1036
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.970
VPA1032
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.967
VV20441
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.966
VVA0982
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.957
ATU4334
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.951
VVA0990
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.946
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.