STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB0787Putative allantoicase; Predicted by orpheus program; predicted by glimmer program; Belongs to the allantoicase family. (330 aa)    
Predicted Functional Partners:
allA
Putative ureidoglycolate hydrolase; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source.
 
  0.998
RB1169
Putative polysaccharide deacetylase family protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.873
RSC2121
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.770
ATU2314
Conserved hypothetical protein, membrane protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.758
AGR_C_42-2
Putative transthyretin family protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
  
 0.714
AGR_C_42
Putative xanthine dehydrogenase, XdhB subunit; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.528
CUTC
Hypothetical copper homeostasis protein; Participates in the control of copper homeostasis. Belongs to the CutC family.
 
      0.474
C4971
Putative malate synthase A; Predicted by orpheus program; predicted by glimmer program; Belongs to the malate synthase family.
  
 0.428
DHT
Hypothetical hydrolase ygeZ; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.427
ACEB
Putative malate synthase A; Predicted by orpheus program; predicted by glimmer program.
  
 0.424
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.