STRINGSTRING
EHK15969 protein (Hypocrea virens) - STRING interaction network
"EHK15969" - Hypothetical protein in Hypocrea virens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHK15969Hypothetical protein (302 aa)    
Predicted Functional Partners:
EHK19844
Hypothetical protein (219 aa)
   
   
 
0.668
EHK25540
Hypothetical protein (542 aa)
   
   
  0.628
EHK22368
Hypothetical protein (534 aa)
   
   
  0.628
EHK15873
Hypothetical protein; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (335 aa)
     
 
  0.560
EHK24075
Hypothetical protein (490 aa)
 
            0.547
EHK26463
Hypothetical protein (654 aa)
   
 
  0.505
EHK25645
Hypothetical protein (648 aa)
   
 
  0.505
EHK24079
Hypothetical protein (263 aa)
   
 
  0.505
PAN2
Hypothetical protein; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA when the poly(A) stretch is bound by poly(A)-binding protein PAB1, which is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome- mediated 3’-5’ exonucleolytic degradation, or deadenlyation- dependent mRNA decaping and subsequent 5’-3’ exonucleolytic degradation by XRN1. [...] (1064 aa)
   
 
  0.505
EHK23270
Hypothetical protein (410 aa)
   
 
  0.505
Your Current Organism:
Hypocrea virens
NCBI taxonomy Id: 29875
Other names: Gliocladium flavofuscum, Gliocladium virens, H. virens, Hypocrea virens, Trichoderma flavofuscum, Trichoderma virens
Server load: low (10%) [HD]