STRINGSTRING
EHK17040 protein (Hypocrea virens) - STRING interaction network
"EHK17040" - Hypothetical protein in Hypocrea virens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHK17040Hypothetical protein (178 aa)    
Predicted Functional Partners:
EHK27271
Hypothetical protein (797 aa)
     
  0.994
EHK26439
Hypothetical protein (238 aa)
     
  0.968
EHK20816
Hypothetical protein (1195 aa)
       
  0.956
EHK15560
Hypothetical protein (410 aa)
     
  0.939
EHK16790
Hypothetical protein (974 aa)
       
  0.939
EHK25002
Hypothetical protein (311 aa)
       
  0.930
EHK27139
Hypothetical protein; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (194 aa)
     
  0.929
EHK24842
Hypothetical protein (655 aa)
       
  0.927
EHK26174
Hypothetical protein (117 aa)
     
  0.922
EHK18670
Hypothetical protein (599 aa)
     
    0.919
Your Current Organism:
Hypocrea virens
NCBI taxonomy Id: 29875
Other names: Gliocladium flavofuscum, Gliocladium virens, H. virens, Hypocrea virens, Trichoderma flavofuscum, Trichoderma virens
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