STRINGSTRING
EHK19844 protein (Hypocrea virens) - STRING interaction network
"EHK19844" - Hypothetical protein in Hypocrea virens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHK19844Hypothetical protein (219 aa)    
Predicted Functional Partners:
EHK15969
Hypothetical protein (302 aa)
   
   
 
0.668
EHK25540
Hypothetical protein (542 aa)
   
   
  0.628
EHK22368
Hypothetical protein (534 aa)
   
   
  0.628
EHK15873
Hypothetical protein; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (335 aa)
     
 
  0.531
EHK26463
Hypothetical protein (654 aa)
   
 
  0.505
EHK25645
Hypothetical protein (648 aa)
   
 
  0.505
EHK24079
Hypothetical protein (263 aa)
   
 
  0.505
PAN2
Hypothetical protein; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA when the poly(A) stretch is bound by poly(A)-binding protein PAB1, which is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome- mediated 3’-5’ exonucleolytic degradation, or deadenlyation- dependent mRNA decaping and subsequent 5’-3’ exonucleolytic degradation by XRN1. [...] (1064 aa)
   
 
  0.505
EHK23270
Hypothetical protein (410 aa)
   
 
  0.505
EHK15826
Hypothetical protein (320 aa)
   
 
  0.505
Your Current Organism:
Hypocrea virens
NCBI taxonomy Id: 29875
Other names: Gliocladium flavofuscum, Gliocladium virens, H. virens, Hypocrea virens, Trichoderma flavofuscum, Trichoderma virens
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