STRINGSTRING
SLX1 protein (Hypocrea virens) - STRING interaction network
"SLX1" - Hypothetical protein in Hypocrea virens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLX1Hypothetical protein; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA (305 aa)    
Predicted Functional Partners:
EHK24847
Hypothetical protein (1658 aa)
     
  0.853
EHK22436
Hypothetical protein (929 aa)
     
  0.797
EHK26532
Hypothetical protein (585 aa)
     
  0.796
EHK23538
Hypothetical protein (731 aa)
     
 
  0.687
EHK26730
Meiosis defective protein MEI3 (356 aa)
     
 
  0.684
EHK21504
Hypothetical protein (319 aa)
     
  0.678
EHK16209
Hypothetical protein (550 aa)
     
 
  0.667
EHK16612
Hypothetical protein; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (660 aa)
       
  0.664
EHK25159
Hypothetical protein (1307 aa)
     
 
  0.661
EHK15880
Hypothetical protein (467 aa)
         
  0.659
Your Current Organism:
Hypocrea virens
NCBI taxonomy Id: 29875
Other names: Gliocladium flavofuscum, Gliocladium virens, H. virens, Hypocrea virens, Trichoderma flavofuscum, Trichoderma virens
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