STRINGSTRING
EHK20721 protein (Hypocrea virens) - STRING interaction network
"EHK20721" - Hypothetical protein in Hypocrea virens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHK20721Hypothetical protein (1423 aa)    
Predicted Functional Partners:
EHK15683
Hypothetical protein (763 aa)
     
 
  0.950
EHK15560
Hypothetical protein (410 aa)
     
 
  0.946
EHK18798
Hypothetical protein (160 aa)
       
 
  0.935
EHK24445
Hypothetical protein (661 aa)
     
 
  0.923
EHK26890
Hypothetical protein (268 aa)
     
 
  0.874
EHK26342
Hypothetical protein (611 aa)
     
 
  0.801
EHK27271
Hypothetical protein (797 aa)
     
 
  0.761
EHK27139
Hypothetical protein; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (194 aa)
       
 
  0.758
EHK20299
Hypothetical protein (244 aa)
     
 
  0.746
EHK26025
Hypothetical protein (114 aa)
       
 
  0.726
Your Current Organism:
Hypocrea virens
NCBI taxonomy Id: 29875
Other names: Gliocladium flavofuscum, Gliocladium virens, H. virens, Hypocrea virens, Trichoderma flavofuscum, Trichoderma virens
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