STRINGSTRING
EHK21450 protein (Hypocrea virens) - STRING interaction network
"EHK21450" - Hypothetical protein in Hypocrea virens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHK21450Hypothetical protein (96 aa)    
Predicted Functional Partners:
EHK24281
Hypothetical protein (90 aa)
     
  0.999
EHK25119
Hypothetical protein (83 aa)
     
  0.998
EHK15733
Hypothetical protein (120 aa)
     
  0.998
EHK26025
Hypothetical protein (114 aa)
     
  0.997
EHK26174
Hypothetical protein (117 aa)
     
  0.997
EHK20112
Hypothetical protein (215 aa)
     
  0.994
EHK16780
Hypothetical protein (83 aa)
     
  0.994
EHK20544
Hypothetical protein (97 aa)
     
  0.991
EHK27139
Hypothetical protein; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (194 aa)
     
  0.991
EHK20624
Hypothetical protein (475 aa)
     
  0.990
Your Current Organism:
Hypocrea virens
NCBI taxonomy Id: 29875
Other names: Gliocladium flavofuscum, Gliocladium virens, H. virens, Hypocrea virens, Trichoderma flavofuscum, Trichoderma virens
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