STRINGSTRING
EHK22832 protein (Hypocrea virens) - STRING interaction network
"EHK22832" - Hypothetical protein in Hypocrea virens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHK22832Hypothetical protein (129 aa)    
Predicted Functional Partners:
PAN2
Hypothetical protein; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA when the poly(A) stretch is bound by poly(A)-binding protein PAB1, which is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome- mediated 3’-5’ exonucleolytic degradation, or deadenlyation- dependent mRNA decaping and subsequent 5’-3’ exonucleolytic degradation by XRN1. [...] (1064 aa)
     
  0.974
EHK26463
Hypothetical protein (654 aa)
     
  0.728
EHK25645
Hypothetical protein (648 aa)
     
  0.728
EHK24079
Hypothetical protein (263 aa)
     
  0.728
EHK23270
Hypothetical protein (410 aa)
     
  0.728
EHK15826
Hypothetical protein (320 aa)
     
  0.728
EHK23837
Hypothetical protein; Binds the poly(A) tail of mRNA (747 aa)
       
  0.683
EHK19142
Hypothetical protein (246 aa)
       
    0.543
EHK26089
Hypothetical protein (379 aa)
     
 
  0.526
EHK23563
Hypothetical protein (773 aa)
     
 
  0.526
Your Current Organism:
Hypocrea virens
NCBI taxonomy Id: 29875
Other names: Gliocladium flavofuscum, Gliocladium virens, H. virens, Hypocrea virens, Trichoderma flavofuscum, Trichoderma virens
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