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USB1 protein (Hypocrea virens) - STRING interaction network
"USB1" - Hypothetical protein in Hypocrea virens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USB1Hypothetical protein; Phosphodiesterase responsible for the U6 snRNA 3’ end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA (323 aa)    
Predicted Functional Partners:
EHK27398
Hypothetical protein (354 aa)
       
      0.477
EHK27084
Hypothetical protein (670 aa)
       
      0.477
EHK25004
Hypothetical protein (1123 aa)
       
      0.477
EHK24686
Hypothetical protein (148 aa)
       
      0.477
EHK24569
Hypothetical protein (310 aa)
       
      0.477
EHK24489
Hypothetical protein (148 aa)
       
      0.477
EHK16431
Hypothetical protein (683 aa)
       
      0.477
EHK15795
Hypothetical protein (816 aa)
       
      0.477
Your Current Organism:
Hypocrea virens
NCBI taxonomy Id: 29875
Other names: Gliocladium flavofuscum, Gliocladium virens, H. virens, Hypocrea virens, Trichoderma flavofuscum, Trichoderma virens
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