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EHK27139 protein (Hypocrea virens) - STRING interaction network
"EHK27139" - Hypothetical protein in Hypocrea virens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
EHK27139Hypothetical protein; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (194 aa)    
Predicted Functional Partners:
EHK21450
Hypothetical protein (96 aa)
     
  0.991
EHK15560
Hypothetical protein (410 aa)
     
  0.985
EHK20112
Hypothetical protein (215 aa)
     
  0.982
EHK25119
Hypothetical protein (83 aa)
     
  0.980
EHK15733
Hypothetical protein (120 aa)
     
  0.977
EHK26025
Hypothetical protein (114 aa)
     
  0.977
EHK26174
Hypothetical protein (117 aa)
     
  0.973
EHK24281
Hypothetical protein (90 aa)
     
  0.964
EHK20299
Hypothetical protein (244 aa)
     
  0.951
EHK15683
Hypothetical protein (763 aa)
       
  0.931
Your Current Organism:
Hypocrea virens
NCBI taxonomy Id: 29875
Other names: Gliocladium flavofuscum, Gliocladium virens, H. virens, Hypocrea virens, Trichoderma flavofuscum, Trichoderma virens
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