STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110483216F-box only protein 28. (309 aa)    
Predicted Functional Partners:
CUL1
Cullin-1; Belongs to the cullin family.
   
 
 0.902
SKP1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 
 0.823
KLHL28
Kelch-like protein 28.
      
 0.545
MYNN
Myoneurin.
   
  
 0.523
CUL3
Cullin-3; Belongs to the cullin family.
   
 
 0.523
ZNF512
Zinc finger protein 512.
      
 0.516
TRAF5
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
   0.485
PAK2
Non-specific serine/threonine protein kinase.
   
   0.461
RMND5A
Protein RMD5 A.
   
  
 0.460
CUEDC2
CUE domain-containing protein 2-A.
      
 0.453
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.