STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KCNF1Potassium voltage-gated channel subfamily F member 1; Belongs to the potassium channel family. (487 aa)    
Predicted Functional Partners:
SLITRK1
SLIT and NTRK-like protein 1.
   
 
 0.877
NOL10
Nucleolar protein 10.
      
 0.874
SLC66A3
PQ-loop repeat-containing protein 3.
      
 0.866
KCNAB1
Voltage-gated potassium channel subunit beta-1.
   
 0.811
KCNAB2
Voltage-gated potassium channel subunit beta-2.
   
 0.811
GABRA5
Gamma-aminobutyric acid receptor subunit alpha-5; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
   
  
 0.796
ENSLSDP00000008068
annotation not available
   
  0.770
NTRK2
Tyrosine-protein kinase receptor.
   
  
 0.707
E2F6
Transcription factor E2F6.
      
 0.701
KCNH4
Potassium voltage-gated channel subfamily H member 4.
   
 
 0.642
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.