STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NFXL1NF-X1-type zinc finger protein NFXL1. (236 aa)    
Predicted Functional Partners:
CNGA1
Cyclic nucleotide-gated channel rod photoreceptor subunit alpha.
      
 0.872
DNAAF4
Dyslexia susceptibility 1 candidate gene 1.
    
 
 0.715
DCUN1D4
DCN1-like protein.
      
 0.567
CMIP
C-Maf-inducing protein.
      
 0.564
OCIAD1
OCIA domain-containing protein 1.
      
 0.562
RPL7A
60S ribosomal protein L7a.
   
 
 0.559
ZNF451
Zinc finger protein 451.
      
 0.544
RAD23B
UV excision repair protein RAD23 B.
   
   0.533
ANKH
Progressive ankylosis.
      
 0.529
EDC3
Enhancer of mRNA-decapping protein 3.
   
    0.526
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.